CDS

Accession Number TCMCG017C11017
gbkey CDS
Protein Id OMP00248.1
Location complement(join(47983..48589,49665..49808,50420..50540,50663..50804,51196..51496,52301..52352,52555..53019,53103..53723,54551..54617,54694..55029,55538..55699,55778..55827,56298..56368,56456..56516,57984..58114,58704..58897,59087..59200,59278..59399,59476..59530,59637..59728,59880..59994,60123..60205,60677..60811,60927..61070,62547..62856,62941..63000))
GeneID InterPro:IPR001650
Organism Corchorus olitorius
locus_tag COLO4_12801

Protein

Length 1584aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01014969.1
Definition hypothetical protein COLO4_12801 [Corchorus olitorius]
Locus_tag COLO4_12801

EGGNOG-MAPPER Annotation

COG_category A
Description DEAD DEAH box RNA helicase family protein
KEGG_TC -
KEGG_Module M00413        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10896        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03460        [VIEW IN KEGG]
map03460        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000280        [VIEW IN EMBL-EBI]
GO:0000712        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003682        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006260        [VIEW IN EMBL-EBI]
GO:0006261        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006310        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007049        [VIEW IN EMBL-EBI]
GO:0007059        [VIEW IN EMBL-EBI]
GO:0007127        [VIEW IN EMBL-EBI]
GO:0007131        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0022402        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0031297        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0035825        [VIEW IN EMBL-EBI]
GO:0036297        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043240        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045005        [VIEW IN EMBL-EBI]
GO:0045132        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048285        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051304        [VIEW IN EMBL-EBI]
GO:0051307        [VIEW IN EMBL-EBI]
GO:0051321        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0061982        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071821        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0098813        [VIEW IN EMBL-EBI]
GO:0140013        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1903046        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCAGATTCAATGGCCTCAGACCCTCCTCTGCAAGTCATCGGCGAAGACGACGAAGACGAGTTTGATTGGGAAGCTGCGGTTAGAGAAATCGACAAAGCATGCCAAACCTCAAAGCCTTCTTCCAACAATTCTTCTTCCCATTTTCCTCCTCCACCTTCTGCCCATATTCCAAAGAGAAACGCGGCTATGGCTACTGCTGTCGGCACTTCGAAGCAATCTACTCTCGACAAGTTCATCGCGAGGGTCGGACCCAGGCCTGCTTCTGATAAGCATCAGACAGTTGAGCCTGAGGTCGACGTTGAGGGTGATTACAGGGTGGCATCTGTCGACATTGATATGGAGGCAGCTAAAACATGGATTTACCCAGTTAATGTCCCCCTTCGTGACTATCAGCTTGCCATAACAAGGACAGCACTATTCTCAAACACTTTGGTTGCATTGCCAACAGGACTCGGAAAAACGCTTATTGCTGCCGTTGTAATTTATAACTACTTCAGATGGTTTCCAGAGGATGGTGGTTCTTTCTTAGATTCTCCATTGGTTCTCTTGCCTGTTTTGACATTGATTAGAAGAGAAATTATTGTGGTCTCTCCTCCTCCCCTCAAGCTTTTGCTCTTCGTTTTATGCCAGCTATCAAGAGGGATATGGAAAATTGTCTTTGCTGCTCCTTCTCGACCACTTGTCATGCAGCAAATAGAAGCATGCCATAATGTTGTTGGAATTCCACAGGAATGGACAATTGATATGACAGGTCAAATAAGTCCGACAAGAAGAGCAAGTTTTTGGAAGACTAAACGAGTTTTCTTTGTTACTCCGCAAGTTTTGGAGAAGGATATTCAATCTGGCACATGTTTGGCAAAGTATCTGGTCTGTTTGGTTATTGACGAGGCTCATCGGGCATTGGGAAATTACTCCTATTGTGTGGCAGTTCGCGAGTTAATGGCCATGCCAGTGCAGTTGAGAATATTAGCTTTGACAGCCACCCCAGGATCAAAGCAGCTCACTATCCAGCAAATAATTGACAACTTATATATATCAAAACTTGAATATCGCAATGAAAGTGACCATGATGTTAGCCCATATGTTCACAACAGAAAGATAGAAGTTATTGAGGTTCCACTTGGGCAAGATGCAGCTGAGGTAAATAATCGGTTGTTAGAAGTAATCCGTCCTTATGTGGCCAGGCTTCATGCAATTGGACTTGTTCAGAACAGGGACTATCAAACTTTAAGCCCAGTTGATTTACTTAATTCAAGGGATAAATTTCGCCAAGCACCTCCCCCAGATCTTCCACATGTTAAGCATGGAGAAGTTGAAGTATGCTTTGCAGTTCTTATTACACTTTATCACATCCGTAAGCTACTTTCAAGTCATGGAATAAGACTTGCATATGAGATGCTTGAGGAAAAGTTGCGACAAGGGCATTTTTCAAGATTGATGAGTAAAAATGAAGATATAATGAAAGCAAAGCTTTTAATGCAACGGAGTTTATCTCATGGTGCACCGAGTCCGAAATTGTCAAAAATGCTACAAATACTGGTTAAGCATTTCGAAACAAAGGATCCAAAAAACTCCAGGGTGATTATCTTCTCAAATTTTAGAGGAAGTGTCAGGGACATAATGAATGCATTAGCAAGTATTGGAGATTTAGTAAAAGCGACGGAGTTTATTGGTCAAAGCTCAGGGAAAGCATTGAAAGGCCAGTCTCAAAAGGTTCAACAGGCAGTTTTGGAGAAATTTCGAGCTGGTGGGTACAATGTTATTGTTGCCACATCAATTGGTGAAGAAGGCCTAGATATCATGGAAGTTGATCTTGTAATATGTTTTGATGCTAATGTTTCTCCTTTGAGGATGATTCAGCGGATGGGGAGGACTGGAAGGAAGCACGATGGACGAATTCCCCATATTTGCAAACCAGAAGTTCAATATGTTGAGCTGTCAATTGAACAATTTGTTCCTCGGGGGAAAAAATTAAAAGATGATCAGGCTATTGAGACACCTCCTTTTCGGGAAAAACTAACTGTTGCAGAGACTGAATTAATTGCCAAGTATTTCCATCCTACCAGTGAAAGCACTTGGAGACCTTCACTCATTGCCTTCCCCGACTTCCAAGCATCTCCCTCTAAAGTATTTAAAGTAAAGCATTCTTGTAGAACAGAGATGCTGATAGAATCCATGCAATATTTGCAAGGCTTAACCTTTCCAGGAGGCAATGGGGATTATTTTGTTGAGGATGAAGTTTCTTCAGGTGATTGCTTTGGAGTTGGCATTGTTGAGCAGCATGACAGTGGTAGAAAAGATTCACTAGTTTTGGATAATTGTCCAGCTGCCAACACTCAATTAGGAGGGTTGTATCCTGCAGAATCATCTATGAGGATTTCGAGAACTAAGGAAAAGCTTAATGGGCCTGATTGTGGACAAAAATGTCCCCAAGCACACTCCTACCTTTTTGGCTCTGATTTTGTGTCTGTTGATGCTCTTGGAAACATCCTAATCATATCTGTTCCTTCACTGCATTTTGAGGATTTAATGCATTCTAAGCATGAAAGTCCTCGTACTAAAGAGATGAAAAATTCTTTGAAGGAAGATGCTAACCATGTGAAGATTTCAGCTGGAACTATGCTAACTGAAGCTGTTCCAAATGTAACAGCCTCTCAGACACAAAGCATAAAAGATGATACTCTATCAATACCTGGATTTTGTGAAATTAATTCCAAGAATGAGAAAATGCTAGATGGAGCAGAAAAAATTCCTGAAACTCCAGGCGGCACTTGTGAAACACCAGATATTGAGGAAATCAAAGCACCGCCACCTCTGGCTGATGAATGCTACACTGATCTCCAAGATACTGAACTTAGCCCCCGCCTAACTAACTTGATTAAAATTGGTGTTGTTCCAGAGTCTCCTATAACTGAAAGTGGGACTTTAAAGGACAAGATAAGAAACGAGCCCTTAATTCCAGACCTGGCGTCACCTGCCAAATTTTGCACTGGACTGCTGTTGAGATCTTCAAGTCCAGTGGAAAATGAAGGGGCCGTTATGGACAATAGCCCCTGTGGAAGAAAAGTCTTGGTTGTGAAAGACAAAATGACACCTTTAGTTAAGATGAACCCTGTTTTCAGATGTAGCCCTGCTTCTCCACTGGAAACCAAAACACCCTTGGCACACCTTACAAACAGTAGTGGTAGTAAAAGTTGGCATTTAAGTTCTGGAGAGAAGGTGGAGATGGTCAATCATGTGCGGAAGTTCAAAAGGTTGCGTAAAGTTGGGGATTGTGGAATAGTTAGGAGCTCAAAAGGCATGATGGAAAACTCTATTTTCTCTATTGAAGATGTTGCCAAATCTTATTCTGATACCAGTCCTATTCGAACAAAGCATGGCAGAGGTAAAAGGAAGCAAGAGAATGATGCCAGAACGTTTATTGATGAGGAGGCTGAATCCATGGGACTGAAACCTAACAAATTGGTATCAGAGACGGTGGTTATGGGAGATTGGCGTCCTTTTCAGCAGCAATTTGAGACTTTTCTCAAATTGTATGAAGAAGATCGTGTGAAAGATCGTCAAGACAGAGAGCAGGATCGTATTAAACAGCAGGAATTGGCTGCGCGATTGGAGGAAATTTCAAGGGAAGTATCTACAGGCAAACGTGAAGAAAGAGTTGATGGAGAAGGAAGTGTTAACAGAGGAAGACGTGACAAAAGGCCTTTTGGAGCTGACGTGCAAGACACAGCCTCATTTGAATATATTGCTGTTGAAGTTGAACTGCATCATCCACGAGATTTATCTACTGCCATGTGTCTTGCTCGGTTGTATGAACGACGGGGTAGCAGCAGCAAATTGGCATCTTCCCAAGTGAAACACACTGATACAGTTCCGTCACAGGTTCTGGAAGATAACAACAGGGTGGATCAAATAGAAGAACACCTGGAGGATTTAGACATTGTAGAAAATCCGCTATCCAACTATTCCGCTTGTGGACAAGCGATCTTCCGTGGGGGGAAGGTGTCTACAGATGCTGAAATATCAGCTGATGAAGAAGATGACAATGAATCGTATGATGATAGTTTCATAGATGACAGGATAAATCCTACTGCTGGCAGTAGCCAGACTGAATCTGGTATAGTTGACATGATGGCAATTTACAGGCGTTCTTTGCTAAGCCAATCACCAATGGTTGGGCGGCCAACTTCTTCCGAATTTAGTCCTAACTGTGTAGCTTCTACAAGCAAAGAAAATGGAAGTGGGTTTGCCTTTGGAAAGTCATTGTATTCTCCCCAGGTATCGGAGTCCATATATCAACCCACAAAGAAGAATACAGAGTCGTTTCAAATGGAAAAGAGGGTATCCTCAGAATCCATACCCTGCAGAATTAATGGTTTTCCTAAAGAATATGATAGTATGCATAGTAGGAAGAGAAAGTTGAGTTTCCTCCAATTGGAGTCTATTCCTGCAATTAACTTAGATAGAGAGTTCTTATTGCAATCTGAGGTTCAAGGAAAAGAGTCAAGTAAGGGTTCTCAGCAGCCTCAAGTGGAAAAAATCACTGTAAACAAGAATGAGTTTGATGATGACGATGATGATGATGATCAATTTTATGCAAGTCTTGATCTTGATGCTGTTGAGGCACAAGCTACCTTGCTTCTCAGGCACAGATCAGAGTCATCAATAGAGAAGCAAGAGAATATTGCTCCATCAAACCTGCAGCATGGTGGGCTTCAGGGTTCTCCGTCATTCGATCTAGGGATATGGTAG
Protein:  
MADSMASDPPLQVIGEDDEDEFDWEAAVREIDKACQTSKPSSNNSSSHFPPPPSAHIPKRNAAMATAVGTSKQSTLDKFIARVGPRPASDKHQTVEPEVDVEGDYRVASVDIDMEAAKTWIYPVNVPLRDYQLAITRTALFSNTLVALPTGLGKTLIAAVVIYNYFRWFPEDGGSFLDSPLVLLPVLTLIRREIIVVSPPPLKLLLFVLCQLSRGIWKIVFAAPSRPLVMQQIEACHNVVGIPQEWTIDMTGQISPTRRASFWKTKRVFFVTPQVLEKDIQSGTCLAKYLVCLVIDEAHRALGNYSYCVAVRELMAMPVQLRILALTATPGSKQLTIQQIIDNLYISKLEYRNESDHDVSPYVHNRKIEVIEVPLGQDAAEVNNRLLEVIRPYVARLHAIGLVQNRDYQTLSPVDLLNSRDKFRQAPPPDLPHVKHGEVEVCFAVLITLYHIRKLLSSHGIRLAYEMLEEKLRQGHFSRLMSKNEDIMKAKLLMQRSLSHGAPSPKLSKMLQILVKHFETKDPKNSRVIIFSNFRGSVRDIMNALASIGDLVKATEFIGQSSGKALKGQSQKVQQAVLEKFRAGGYNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKHDGRIPHICKPEVQYVELSIEQFVPRGKKLKDDQAIETPPFREKLTVAETELIAKYFHPTSESTWRPSLIAFPDFQASPSKVFKVKHSCRTEMLIESMQYLQGLTFPGGNGDYFVEDEVSSGDCFGVGIVEQHDSGRKDSLVLDNCPAANTQLGGLYPAESSMRISRTKEKLNGPDCGQKCPQAHSYLFGSDFVSVDALGNILIISVPSLHFEDLMHSKHESPRTKEMKNSLKEDANHVKISAGTMLTEAVPNVTASQTQSIKDDTLSIPGFCEINSKNEKMLDGAEKIPETPGGTCETPDIEEIKAPPPLADECYTDLQDTELSPRLTNLIKIGVVPESPITESGTLKDKIRNEPLIPDLASPAKFCTGLLLRSSSPVENEGAVMDNSPCGRKVLVVKDKMTPLVKMNPVFRCSPASPLETKTPLAHLTNSSGSKSWHLSSGEKVEMVNHVRKFKRLRKVGDCGIVRSSKGMMENSIFSIEDVAKSYSDTSPIRTKHGRGKRKQENDARTFIDEEAESMGLKPNKLVSETVVMGDWRPFQQQFETFLKLYEEDRVKDRQDREQDRIKQQELAARLEEISREVSTGKREERVDGEGSVNRGRRDKRPFGADVQDTASFEYIAVEVELHHPRDLSTAMCLARLYERRGSSSKLASSQVKHTDTVPSQVLEDNNRVDQIEEHLEDLDIVENPLSNYSACGQAIFRGGKVSTDAEISADEEDDNESYDDSFIDDRINPTAGSSQTESGIVDMMAIYRRSLLSQSPMVGRPTSSEFSPNCVASTSKENGSGFAFGKSLYSPQVSESIYQPTKKNTESFQMEKRVSSESIPCRINGFPKEYDSMHSRKRKLSFLQLESIPAINLDREFLLQSEVQGKESSKGSQQPQVEKITVNKNEFDDDDDDDDQFYASLDLDAVEAQATLLLRHRSESSIEKQENIAPSNLQHGGLQGSPSFDLGIW